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Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, July 23rd |
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PGT001 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Detecting Differential Gene Expression Linked to Foraging Behavior in Cuscuta harperi Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Webster, Rebecca. | Next generation sequencing Illumina Dodder Cuscuta Holoparasite VOC Recognition Foraging Behavior |
PGT002 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Genome-wide Identification of Mitogen Activated Protein Kinase (MAP Kinase) Cascade Genes in Sunflower Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Schweitzer, Sarah; Neupane, Surendra; Andersen, Ethan; Zhou, Ruanbao; Fenell, Anne; Nepal, Madhav. | MAP Kinase Gene Family Abiotic Stress Signal Transduction Pathway MAPK MAPKK MAPKKK Zik Raf MEKK
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PGT003 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Genome-wide Identification of Disease Resistance Genes in Sunflower (Helianthus annuus L.) Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Neupane, Surendra; Nepal, Madhav. | NBS-genes Sunflower TNLs CNLs RNLs Phylogeny of R-genes |
PGT004 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Evolutionary Conservation of PBS1 Homologs in Family Poaceae Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Andersen, Ethan; Ali, Shaukat; Byamukama, Emmanuel; Yen, Yang; Neupane, Surendra; Nepal, Madhav. | Disease Resistance Plant Immunity Grasses Decoy Evolutionary Conservation |
PGT005 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Genome-wide identification of resistant genes in domesticated and wild rice varieties (Oryza spp; Poaceae) Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Allasi Canales , Nataly Olivia. | NBS-LRR Oryza positive selection R gene phylogeny |
PGT006 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Identifying Gene Candidates of the Shikonin Biosynthesis Pathway in the Chinese Medicinal Plant Lithospermum erythrorhizon Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Auber, Robert; Crook, Joseph; Widhalm, Joshua; Wisecaver, Jennifer. | Specialized Metabolite De novo Transcriptome Differential Expression Analysis |
PGT007 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Assessing Contemporary Evolution in Helianthus annuus using RNA-Seq Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Spear, Marissa M.; Etterson, Julie; Gross, Briana. | RNA-Seq Evolution Resurrection Helianthus |
PGT008 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Methylation repatterning in the endosperm and embryo of interploid Mimulus hybrids Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Lawrence , Amelia H; Kinser, Taliesin; Puzey, Joshua. | Methylation Endosperm Hybridization Polyploid Interploid Mimulus |
PGT009 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Differential gene expression linked to a reversion from dioecy to gynodioecy in Carica papaya Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Chae, Taylor; Harkess, Alex; Moore, Rich. | Quantitative Genetics Evolution Differential Expression Analysis |
PGT010 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Comparative transcriptomics and Selection of Differentially Expressed Genes in Drought-Shocked Mentzelia (Loasaceae) Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Wiggins, Raegan; Devitt, Jessica; Schenk, John. | Differential Expression Analysis drought Adaptive response Mentzelia Natural Selection Transcriptome evolution Expression variance and evolution model Xerophytes Loasaceae |
PGT011 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Machine learning approaches for the inference of WGDs from gene age distributions Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Trostle, Alex; Goyal, Anshu; Galuska, Sally; Reardon, Chris; Tiley, George; Ellis, Jake; Li, Zheng; Sutherland, Brittany; Barker, Michael. | Polyploidy Genomics Machine Learning WGD paleopolyploidy gene duplication |
PGT012 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | LTR_retriever: a highly accurate and sensitive program for identification of LTR retrotransposons Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Ou, Shujun; Jiang, Ning. | LTR retrotransposon LTR_retriever transposable element genome annotation Evolution |
PGT013 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Intragenomic variation of ribosomal genes and evidence of concerted evolution in the opportunistic pathogen Candida Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Buchheim, Mark; Alanagreh, Lo'ai. | Candida Chlamydomonas Haematococcus concerted evolution parasexuality intragenomic variation ITS2 |
Tuesday, July 24th |
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21001 | July 24th 8:00 am | 102/Mayo Civic Center | Comparative Transcriptomics and Genomic Patterns of Discordance in Capsiceae Log in to add this item to your schedule | Oral Paper | Spalink, Daniel; Stoffel, Kevin; Genevieve, Walden; Amanda, Hulse-Kemp; Theresa, Hill; Allen, Van Deynze; Bohs, Lynn Allison. | Capsiceae genealogical discordance pungency positive selection |
21002 | July 24th 8:15 am | 102/Mayo Civic Center | Caught in action: Fine-scale plastome evolution in the parasitic plants of Cuscuta sect. Ceratophorae (Convolvulaceae) Log in to add this item to your schedule | Oral Paper | Banerjee, Arjan; Stefanovic, Sasa. | Parasitic plant Cuscuta Convolvulaceae plastome Plastid Heterotrophy |
21003 | July 24th 8:30 am | 102/Mayo Civic Center | Variation in photosynthetic function and gene expression in parasitic dodder Log in to add this item to your schedule | Oral Paper | Schneider, Adam; Besik, Ariana; Ensminger, Ingo; Stefanovic, Sasa. | Cuscuta photosynthesis pulse amplutide modified (PAM) fluorimetry transcriptomics |
21004 | July 24th 8:45 am | 102/Mayo Civic Center | Canceled Elucidating Floral Nectary Development in Cleomaceae Using Histology and Transcriptomics Log in to add this item to your schedule | Oral Paper | Carey, Shane; Hall, Jocelyn. | Cleomaceae transcriptomics histology Nectary |
21005 | July 24th 9:00 am | 102/Mayo Civic Center | Genes, Genomes, and Gamma Log in to add this item to your schedule | Oral Paper | Chanderbali, Andre; Berger, Brent; Albert, Victor; Howarth, Dianella; Soltis, Douglas; Soltis, Pamela S.. | gamma Pentapetalae Buxales Trochodendrales paleohexaploidy eudicots |
21006 | July 24th 9:15 am | 102/Mayo Civic Center | Transcriptomics, phylogeny, and biochemistry elucidate evolution of chemical diversity and complexity in Lamiaceae Log in to add this item to your schedule | Oral Paper | Buell, C. Robin; Crisovan, Emily; Dudareva, Natalia; Garcia, Nicolas; Godden, Grant; Henry, Laura; Kamileen, Mohamed O.; Kates, Heather; Kilgore, Matthew B.; Lichman, Benjamin R.; Mavrodiev, Evgeny; Newton, Linsey; Rodriguez-Lopez, Carlos; O'Connor, Sarah E.; Soltis, Douglas; Soltis, Pamela S.; Vaillancourt, Brieanne; Wiegert-Rininger, Krystle; Zhao, Dongyan. | Lamiaceae transcriptomes Genomics Specialized metabolism monoterpenes sesquiterpenes iridoids phylogeny Biochemistry |
21007 | July 24th 9:30 am | 102/Mayo Civic Center | Ancient whole genome duplications as drivers of chemical diversification in Lamiaceae Log in to add this item to your schedule | Oral Paper | Kinser, Taliesin; Godden, Grant; Soltis, Douglas; Soltis, Pamela S.; Consortium, Mint Evolutionary Genomics. | chemical diversification Polyploidy Phylogenomics ancient WGDs transcriptomics |
| July 24th 9:45 am | 102/Mayo Civic Center | Break Log in to add this item to your schedule | | | |
21009 | July 24th 10:15 am | 102/Mayo Civic Center | Gene co-expression network connectivity is an important determinant of selective constraint during flower diversification in the magic flowers (Achimenes) Log in to add this item to your schedule | Oral Paper | Roberts, Wade; Roalson, Eric. | Achimenes co-expression network flower diversification Gesneriaceae pollination syndrome selective constraint transcriptomics |
21010 | July 24th 10:30 am | 102/Mayo Civic Center | Quantifying transcriptome size variation and dosage responses immediately following ploidy change in Arabidopsis thaliana Log in to add this item to your schedule | Oral Paper | Song, Michael; Potter, Barney; Doyle, Jeff; Coate, Jeremy. | Polyploidy dosage transcriptomes whole genome duplication Evolution |
21011 | July 24th 10:45 am | 102/Mayo Civic Center | Exploring genetic mechanisms of polyploidy-induced salinity tolerance in Arabidopsis thaliana Log in to add this item to your schedule | Oral Paper | Kenny, Cecile; Doyle, Jeff; Coate, Jeremy. | Polyploidy salt stress RNA-Seq |
21012 | July 24th 11:00 am | 102/Mayo Civic Center | Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflict induced by hybridization Log in to add this item to your schedule | Oral Paper | Pires, Joseph Chris; Emery, Marianne; Willis, Madeline; Hao, Yue; Barry, Kerrie; Schmutz, Jeremy; Lyons, Eric; Edger, Patrick; Conant, Gavin. | Genomics Polyploidy Phylogenomics Hybridization evolutionary genomics |
21013 | July 24th 11:15 am | 102/Mayo Civic Center | Exploring serpentine tolerance in Caulanthus amplexicaulis through the integration of multiple genomic datasets Log in to add this item to your schedule | Oral Paper | Garza, Elyssa; Hawkins, Angela; Pepper, Alan. | genome Brassicaceae Serpentine Caulanthus Adaptation |
21014 | July 24th 11:30 am | 102/Mayo Civic Center | Differential drought response and transcriptome size plasticity between aiploid and autotetraploid Tolmiea Log in to add this item to your schedule | Oral Paper | Visger, Clayton; Soltis, Pamela S.; Soltis, Douglas. | Polyploidy transcriptomics autopolyploidy Tolmiea |
21015 | July 24th 11:45 am | 102/Mayo Civic Center | Identifying sequence heteroplasmy across entire organellar genomes of Daucus carota using whole genome sequence data Log in to add this item to your schedule | Oral Paper | Ramsey, Adam; Phan, Vinthuy; Pham, Diem-Trang; Melton, Caroline; Daigle, Bernie; Mandel, Jennifer. | carrot mitochondria chloroplast SNP bioinformatic pipeline NGS |
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25001 | July 24th 1:00 pm | 102/Mayo Civic Center | Assessing genome assembly quality using the LTR Assembly Index (LAI) Log in to add this item to your schedule | Oral Paper | Ou, Shujun; Chen, Jinfeng; Jiang, Ning. | genome assembly continunity LTR retrotransposon LTR Assembly Index |
25002 | July 24th 1:15 pm | 102/Mayo Civic Center | Incorporating a fern genome into land plant evolutionary genomics Log in to add this item to your schedule | Oral Paper | Marchant, Daniel Blaine; Sessa, Emily; Wolf, Paul; Soltis, Pamela S.; Soltis, Douglas. | ferns Polyploidy genome evolution transposable elements transcriptomics |
25003 | July 24th 1:30 pm | 102/Mayo Civic Center | Ancient polyploidy is associated with higher genetic diversity in vascular plants Log in to add this item to your schedule | Oral Paper | Barker, Michael; Jorgensen, Stacy; Qi, Xinshuai. | Polyploidy Genetic diversity WGD paleopolyploidy |
25004 | July 24th 1:45 pm | 102/Mayo Civic Center | Gene Expression Plasticity and the Persistence of Plant Species across Environmental Variation Log in to add this item to your schedule | Oral Paper | Marx, Hannah; Maitner, Brian; Wisely, Eldridge; Jorgensen, Stacy; Dlugosch, Katrina; Barker, Michael. | Differential Expression Analysis Harvard Forest Plasticity NEON RNAseq |
25005 | July 24th 2:00 pm | 102/Mayo Civic Center | From deep phylogeny to species complexes: The evolution of genomic repetitive elements in ferns Log in to add this item to your schedule | Oral Paper | Grusz, Amanda; Fehrenbach, Patrick; Sigel, Erin. | apomixis Hybridization Polyploidy transposable elements |
25006 | July 24th 2:15 pm | 102/Mayo Civic Center | Ancient sex chromosome systems in plants Log in to add this item to your schedule | Oral Paper | Carey, Sarah; Johnson, Matthew; Payton, Adam; Conrad, Roth; Landis, Jacob; Olsson, Sanna; Huttunen, Sanna; Burleigh, Gordon; McDaniel, Stuart. | Sex chromosomes Bryophytes |
25007 | July 24th 2:30 pm | 102/Mayo Civic Center | Testing a "two gene" model for sex chromosome evolution in asparagus Log in to add this item to your schedule | Oral Paper | Harkess, Alex; Leebens-Mack, Jim; Meyers, Blake; Huang, Kun; Batish, Mona. | Sex chromosomes dioecy |
25008 | July 24th 2:45 pm | 102/Mayo Civic Center | The genomic composition and domestication of Asian rice revealed by 3,400 rice genomes Log in to add this item to your schedule | Oral Paper | Ou, Shujun; Jiang, Ning. | Oryza domestication Rice selective sweep population structure |
25009 | July 24th 3:00 pm | 102/Mayo Civic Center | Canceled Plastome Evolution in Apocynaceae Log in to add this item to your schedule | Oral Paper | Straub, Shannon; Boutte, Julien; Walter, Lauren; Lunderman, Elizabeth; Bailey, Donovan; Livshultz, Tatyana; Simoes, André; Fishbein, Mark. | Apocynaceae plastome intracellular gene transfer pseudogene |
| July 24th 3:15 pm | 102/Mayo Civic Center | Break Log in to add this item to your schedule | | | |
25011 | July 24th 3:45 pm | 102/Mayo Civic Center | Gene Family Expansion in the Sonoran Desert Clade of Asclepias Log in to add this item to your schedule | Oral Paper | Boutte, Julien; Fishbein, Mark; Coriton, Olivier; Rousseau-Gueutin, Mathieu; Straub, Shannon. | gene duplication FISH Copy Number Estimation |
25012 | July 24th 4:00 pm | 102/Mayo Civic Center | Variation in evolutionary rates across genomes in orchids Log in to add this item to your schedule | Oral Paper | Valencia, Janice ; Neubig, Kurt; Whitten, William. | |
25013 | July 24th 4:15 pm | 102/Mayo Civic Center | Transcription Factor Family Evolution in Fully Mycoheterotrophic Orchids Log in to add this item to your schedule | Oral Paper | Sinn, Brandon; Ranjbaran, Ali; Barrett, Craig. | Orchid fungi transcriptomics transcription factors gene family evolution |
25014 | July 24th 4:30 pm | 102/Mayo Civic Center | Comparative genomics of a species radiation: sequencing the apple tribe Log in to add this item to your schedule | Oral Paper | DaCosta, Jeffrey; Yant, Levi; Potter, Daniel; Mathews, Sarah. | Maleae Rosaceae Comparative Genomics whole genome duplication |
25015 | July 24th 4:45 pm | 102/Mayo Civic Center | Transposon diversity and abundance variation as a consequence of climatic variables in Andropogoneae (Poaceae) Log in to add this item to your schedule | Oral Paper | McKain, Michael; Pienaar, Jason; Zudock, Kristina; AuBuchon, Taylor; Saeidi, Saman; Pasquet, Remy; Layton, Daniel; Welker, Cassiano; Art-han, Watchara; Traiperm, Paweena; McAllister, Chrissy; Kellogg, Elizabeth. | Andropogoneae Poaceae genome evolution transposable elements bioclim |
25016 | July 24th 5:00 pm | 102/Mayo Civic Center | The interplay of alternative splicing and gene duplication in Oryza Log in to add this item to your schedule | Oral Paper | Catlin, Nathan; Wing, Rod A.; Soltis, Douglas; Soltis, Pamela S.; Barbazuk, W. Brad. | Alternative splicing gene duplication Oryza transcriptomics |
25017 | July 24th 5:15 pm | 102/Mayo Civic Center | Characterizing persistent bacterial co-habitants and their genetic contribution to an araphid pennate diatom Log in to add this item to your schedule | Oral Paper | Parks, Matthew; Wickett, Norman; Alverson, Andrew. | Diatoms phycosphere bacteria horizontal gene transfer |