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| Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, July 23rd |
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| PGT001 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Detecting Differential Gene Expression Linked to Foraging Behavior in Cuscuta harperi
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Webster, Rebecca. | Next generation sequencing
Illumina
Dodder
Cuscuta
Holoparasite
VOC Recognition
Foraging Behavior |
| PGT002 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Genome-wide Identification of Mitogen Activated Protein Kinase (MAP Kinase) Cascade Genes in Sunflower
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Schweitzer, Sarah; Neupane, Surendra; Andersen, Ethan; Zhou, Ruanbao; Fenell, Anne; Nepal, Madhav. | MAP Kinase Gene Family
Abiotic Stress
Signal Transduction Pathway
MAPK
MAPKK
MAPKKK
Zik
Raf
MEKK
|
| PGT003 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Genome-wide Identification of Disease Resistance Genes in Sunflower (Helianthus annuus L.)
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Neupane, Surendra; Nepal, Madhav. | NBS-genes
Sunflower
TNLs
CNLs
RNLs
Phylogeny of R-genes |
| PGT004 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Evolutionary Conservation of PBS1 Homologs in Family Poaceae
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Andersen, Ethan; Ali, Shaukat; Byamukama, Emmanuel; Yen, Yang; Neupane, Surendra; Nepal, Madhav. | Disease Resistance
Plant Immunity
Grasses
Decoy
Evolutionary Conservation |
| PGT005 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Genome-wide identification of resistant genes in domesticated and wild rice varieties (Oryza spp; Poaceae)
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Allasi Canales , Nataly Olivia. | NBS-LRR
Oryza
positive selection
R gene phylogeny |
| PGT006 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Identifying Gene Candidates of the Shikonin Biosynthesis Pathway in the Chinese Medicinal Plant Lithospermum erythrorhizon
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Auber, Robert; Crook, Joseph; Widhalm, Joshua; Wisecaver, Jennifer. | Specialized Metabolite
De novo Transcriptome
Differential Expression Analysis |
| PGT007 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Assessing Contemporary Evolution in Helianthus annuus using RNA-Seq
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Spear, Marissa M.; Etterson, Julie; Gross, Briana. | RNA-Seq
Evolution
Resurrection
Helianthus |
| PGT008 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Methylation repatterning in the endosperm and embryo of interploid Mimulus hybrids
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Lawrence , Amelia H; Kinser, Taliesin; Puzey, Joshua. | Methylation
Endosperm
Hybridization
Polyploid
Interploid
Mimulus |
| PGT009 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Differential gene expression linked to a reversion from dioecy to gynodioecy in Carica papaya
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Chae, Taylor; Harkess, Alex; Moore, Rich. | Quantitative Genetics
Evolution
Differential Expression Analysis |
| PGT010 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Comparative transcriptomics and Selection of Differentially Expressed Genes in Drought-Shocked Mentzelia (Loasaceae)
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Wiggins, Raegan; Devitt, Jessica; Schenk, John. | Differential Expression Analysis
drought
Adaptive response
Mentzelia
Natural Selection
Transcriptome evolution
Expression variance and evolution model
Xerophytes
Loasaceae |
| PGT011 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Machine learning approaches for the inference of WGDs from gene age distributions
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Trostle, Alex; Goyal, Anshu; Galuska, Sally; Reardon, Chris; Tiley, George; Ellis, Jake; Li, Zheng; Sutherland, Brittany; Barker, Michael. | Polyploidy
Genomics
Machine Learning
WGD
paleopolyploidy
gene duplication |
| PGT012 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | LTR_retriever: a highly accurate and sensitive program for identification of LTR retrotransposons
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Ou, Shujun; Jiang, Ning. | LTR retrotransposon
LTR_retriever
transposable element
genome annotation
Evolution |
| PGT013 | July 23rd 5:30 pm | Grand Ballroom - Exhibit Hall/Mayo Civic Center | Intragenomic variation of ribosomal genes and evidence of concerted evolution in the opportunistic pathogen Candida
Log in to add this item to your schedule | Poster: Comparative Genomics/Transcriptomics | Buchheim, Mark; Alanagreh, Lo'ai. | Candida
Chlamydomonas
Haematococcus
concerted evolution
parasexuality
intragenomic variation
ITS2 |
Tuesday, July 24th |
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| 21001 | July 24th 8:00 am | 102/Mayo Civic Center | Comparative Transcriptomics and Genomic Patterns of Discordance in Capsiceae
Log in to add this item to your schedule | Oral Paper | Spalink, Daniel; Stoffel, Kevin; Genevieve, Walden; Amanda, Hulse-Kemp; Theresa, Hill; Allen, Van Deynze; Bohs, Lynn Allison. | Capsiceae
genealogical discordance
pungency
positive selection |
| 21002 | July 24th 8:15 am | 102/Mayo Civic Center | Caught in action: Fine-scale plastome evolution in the parasitic plants of Cuscuta sect. Ceratophorae (Convolvulaceae)
Log in to add this item to your schedule | Oral Paper | Banerjee, Arjan; Stefanovic, Sasa. | Parasitic plant
Cuscuta
Convolvulaceae
plastome
Plastid
Heterotrophy |
| 21003 | July 24th 8:30 am | 102/Mayo Civic Center | Variation in photosynthetic function and gene expression in parasitic dodder
Log in to add this item to your schedule | Oral Paper | Schneider, Adam; Besik, Ariana; Ensminger, Ingo; Stefanovic, Sasa. | Cuscuta
photosynthesis
pulse amplutide modified (PAM) fluorimetry
transcriptomics |
| 21004 | July 24th 8:45 am | 102/Mayo Civic Center | Canceled Elucidating Floral Nectary Development in Cleomaceae Using Histology and Transcriptomics
Log in to add this item to your schedule | Oral Paper | Carey, Shane; Hall, Jocelyn. | Cleomaceae
transcriptomics
histology
Nectary |
| 21005 | July 24th 9:00 am | 102/Mayo Civic Center | Genes, Genomes, and Gamma
Log in to add this item to your schedule | Oral Paper | Chanderbali, Andre; Berger, Brent; Albert, Victor; Howarth, Dianella; Soltis, Douglas; Soltis, Pamela S.. | gamma
Pentapetalae
Buxales
Trochodendrales
paleohexaploidy
eudicots |
| 21006 | July 24th 9:15 am | 102/Mayo Civic Center | Transcriptomics, phylogeny, and biochemistry elucidate evolution of chemical diversity and complexity in Lamiaceae
Log in to add this item to your schedule | Oral Paper | Buell, C. Robin; Crisovan, Emily; Dudareva, Natalia; Garcia, Nicolas; Godden, Grant; Henry, Laura; Kamileen, Mohamed O.; Kates, Heather; Kilgore, Matthew B.; Lichman, Benjamin R.; Mavrodiev, Evgeny; Newton, Linsey; Rodriguez-Lopez, Carlos; O'Connor, Sarah E.; Soltis, Douglas; Soltis, Pamela S.; Vaillancourt, Brieanne; Wiegert-Rininger, Krystle; Zhao, Dongyan. | Lamiaceae
transcriptomes
Genomics
Specialized metabolism
monoterpenes
sesquiterpenes
iridoids
phylogeny
Biochemistry |
| 21007 | July 24th 9:30 am | 102/Mayo Civic Center | Ancient whole genome duplications as drivers of chemical diversification in Lamiaceae
Log in to add this item to your schedule | Oral Paper | Kinser, Taliesin; Godden, Grant; Soltis, Douglas; Soltis, Pamela S.; Consortium, Mint Evolutionary Genomics. | chemical diversification
Polyploidy
Phylogenomics
ancient WGDs
transcriptomics |
| July 24th 9:45 am | 102/Mayo Civic Center | Break
Log in to add this item to your schedule | | | |
| 21009 | July 24th 10:15 am | 102/Mayo Civic Center | Gene co-expression network connectivity is an important determinant of selective constraint during flower diversification in the magic flowers (Achimenes)
Log in to add this item to your schedule | Oral Paper | Roberts, Wade; Roalson, Eric. | Achimenes
co-expression network
flower diversification
Gesneriaceae
pollination syndrome
selective constraint
transcriptomics |
| 21010 | July 24th 10:30 am | 102/Mayo Civic Center | Quantifying transcriptome size variation and dosage responses immediately following ploidy change in Arabidopsis thaliana
Log in to add this item to your schedule | Oral Paper | Song, Michael; Potter, Barney; Doyle, Jeff; Coate, Jeremy. | Polyploidy
dosage
transcriptomes
whole genome duplication
Evolution |
| 21011 | July 24th 10:45 am | 102/Mayo Civic Center | Exploring genetic mechanisms of polyploidy-induced salinity tolerance in Arabidopsis thaliana
Log in to add this item to your schedule | Oral Paper | Kenny, Cecile; Doyle, Jeff; Coate, Jeremy. | Polyploidy
salt stress
RNA-Seq |
| 21012 | July 24th 11:00 am | 102/Mayo Civic Center | Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflict induced by hybridization
Log in to add this item to your schedule | Oral Paper | Pires, Joseph Chris; Emery, Marianne; Willis, Madeline; Hao, Yue; Barry, Kerrie; Schmutz, Jeremy; Lyons, Eric; Edger, Patrick; Conant, Gavin. | Genomics
Polyploidy
Phylogenomics
Hybridization
evolutionary genomics |
| 21013 | July 24th 11:15 am | 102/Mayo Civic Center | Exploring serpentine tolerance in Caulanthus amplexicaulis through the integration of multiple genomic datasets
Log in to add this item to your schedule | Oral Paper | Garza, Elyssa; Hawkins, Angela; Pepper, Alan. | genome
Brassicaceae
Serpentine
Caulanthus
Adaptation |
| 21014 | July 24th 11:30 am | 102/Mayo Civic Center | Differential drought response and transcriptome size plasticity between aiploid and autotetraploid Tolmiea
Log in to add this item to your schedule | Oral Paper | Visger, Clayton; Soltis, Pamela S.; Soltis, Douglas. | Polyploidy
transcriptomics
autopolyploidy
Tolmiea |
| 21015 | July 24th 11:45 am | 102/Mayo Civic Center | Identifying sequence heteroplasmy across entire organellar genomes of Daucus carota using whole genome sequence data
Log in to add this item to your schedule | Oral Paper | Ramsey, Adam; Phan, Vinthuy; Pham, Diem-Trang; Melton, Caroline; Daigle, Bernie; Mandel, Jennifer. | carrot
mitochondria
chloroplast
SNP
bioinformatic pipeline
NGS |
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| 25001 | July 24th 1:00 pm | 102/Mayo Civic Center | Assessing genome assembly quality using the LTR Assembly Index (LAI)
Log in to add this item to your schedule | Oral Paper | Ou, Shujun; Chen, Jinfeng; Jiang, Ning. | genome
assembly continunity
LTR retrotransposon
LTR Assembly Index |
| 25002 | July 24th 1:15 pm | 102/Mayo Civic Center | Incorporating a fern genome into land plant evolutionary genomics
Log in to add this item to your schedule | Oral Paper | Marchant, Daniel Blaine; Sessa, Emily; Wolf, Paul; Soltis, Pamela S.; Soltis, Douglas. | ferns
Polyploidy
genome evolution
transposable elements
transcriptomics |
| 25003 | July 24th 1:30 pm | 102/Mayo Civic Center | Ancient polyploidy is associated with higher genetic diversity in vascular plants
Log in to add this item to your schedule | Oral Paper | Barker, Michael; Jorgensen, Stacy; Qi, Xinshuai. | Polyploidy
Genetic diversity
WGD
paleopolyploidy |
| 25004 | July 24th 1:45 pm | 102/Mayo Civic Center | Gene Expression Plasticity and the Persistence of Plant Species across Environmental Variation
Log in to add this item to your schedule | Oral Paper | Marx, Hannah; Maitner, Brian; Wisely, Eldridge; Jorgensen, Stacy; Dlugosch, Katrina; Barker, Michael. | Differential Expression Analysis
Harvard Forest
Plasticity
NEON
RNAseq |
| 25005 | July 24th 2:00 pm | 102/Mayo Civic Center | From deep phylogeny to species complexes: The evolution of genomic repetitive elements in ferns
Log in to add this item to your schedule | Oral Paper | Grusz, Amanda; Fehrenbach, Patrick; Sigel, Erin. | apomixis
Hybridization
Polyploidy
transposable elements |
| 25006 | July 24th 2:15 pm | 102/Mayo Civic Center | Ancient sex chromosome systems in plants
Log in to add this item to your schedule | Oral Paper | Carey, Sarah; Johnson, Matthew; Payton, Adam; Conrad, Roth; Landis, Jacob; Olsson, Sanna; Huttunen, Sanna; Burleigh, Gordon; McDaniel, Stuart. | Sex chromosomes
Bryophytes |
| 25007 | July 24th 2:30 pm | 102/Mayo Civic Center | Testing a "two gene" model for sex chromosome evolution in asparagus
Log in to add this item to your schedule | Oral Paper | Harkess, Alex; Leebens-Mack, Jim; Meyers, Blake; Huang, Kun; Batish, Mona. | Sex chromosomes
dioecy |
| 25008 | July 24th 2:45 pm | 102/Mayo Civic Center | The genomic composition and domestication of Asian rice revealed by 3,400 rice genomes
Log in to add this item to your schedule | Oral Paper | Ou, Shujun; Jiang, Ning. | Oryza
domestication
Rice
selective sweep
population structure |
| 25009 | July 24th 3:00 pm | 102/Mayo Civic Center | Canceled Plastome Evolution in Apocynaceae
Log in to add this item to your schedule | Oral Paper | Straub, Shannon; Boutte, Julien; Walter, Lauren; Lunderman, Elizabeth; Bailey, Donovan; Livshultz, Tatyana; Simoes, André; Fishbein, Mark. | Apocynaceae
plastome
intracellular gene transfer
pseudogene |
| July 24th 3:15 pm | 102/Mayo Civic Center | Break
Log in to add this item to your schedule | | | |
| 25011 | July 24th 3:45 pm | 102/Mayo Civic Center | Gene Family Expansion in the Sonoran Desert Clade of Asclepias
Log in to add this item to your schedule | Oral Paper | Boutte, Julien; Fishbein, Mark; Coriton, Olivier; Rousseau-Gueutin, Mathieu; Straub, Shannon. | gene duplication
FISH
Copy Number Estimation |
| 25012 | July 24th 4:00 pm | 102/Mayo Civic Center | Variation in evolutionary rates across genomes in orchids
Log in to add this item to your schedule | Oral Paper | Valencia, Janice ; Neubig, Kurt; Whitten, William. | |
| 25013 | July 24th 4:15 pm | 102/Mayo Civic Center | Transcription Factor Family Evolution in Fully Mycoheterotrophic Orchids
Log in to add this item to your schedule | Oral Paper | Sinn, Brandon; Ranjbaran, Ali; Barrett, Craig. | Orchid
fungi
transcriptomics
transcription factors
gene family evolution |
| 25014 | July 24th 4:30 pm | 102/Mayo Civic Center | Comparative genomics of a species radiation: sequencing the apple tribe
Log in to add this item to your schedule | Oral Paper | DaCosta, Jeffrey; Yant, Levi; Potter, Daniel; Mathews, Sarah. | Maleae
Rosaceae
Comparative Genomics
whole genome duplication |
| 25015 | July 24th 4:45 pm | 102/Mayo Civic Center | Transposon diversity and abundance variation as a consequence of climatic variables in Andropogoneae (Poaceae)
Log in to add this item to your schedule | Oral Paper | McKain, Michael; Pienaar, Jason; Zudock, Kristina; AuBuchon, Taylor; Saeidi, Saman; Pasquet, Remy; Layton, Daniel; Welker, Cassiano; Art-han, Watchara; Traiperm, Paweena; McAllister, Chrissy; Kellogg, Elizabeth. | Andropogoneae
Poaceae
genome evolution
transposable elements
bioclim |
| 25016 | July 24th 5:00 pm | 102/Mayo Civic Center | The interplay of alternative splicing and gene duplication in Oryza
Log in to add this item to your schedule | Oral Paper | Catlin, Nathan; Wing, Rod A.; Soltis, Douglas; Soltis, Pamela S.; Barbazuk, W. Brad. | Alternative splicing
gene duplication
Oryza
transcriptomics |
| 25017 | July 24th 5:15 pm | 102/Mayo Civic Center | Characterizing persistent bacterial co-habitants and their genetic contribution to an araphid pennate diatom
Log in to add this item to your schedule | Oral Paper | Parks, Matthew; Wickett, Norman; Alverson, Andrew. | Diatoms
phycosphere
bacteria
horizontal gene transfer |
