ID | Title | Section/Topic | Authors | Keywords |
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886 | Ancient polyploidy is associated with higher genetic diversity in vascular plants Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Barker, Michael; Jorgensen, Stacy; Qi, Xinshuai. | Polyploidy Genetic diversity WGD paleopolyploidy |
411 | Ancient sex chromosome systems in plants Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Carey, Sarah; Johnson, Matthew; Payton, Adam; Conrad, Roth; Landis, Jacob; Olsson, Sanna; Huttunen, Sanna; Burleigh, Gordon; McDaniel, Stuart. | Sex chromosomes Bryophytes |
557 | Ancient whole genome duplications as drivers of chemical diversification in Lamiaceae Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Kinser, Taliesin; Godden, Grant; Soltis, Douglas; Soltis, Pamela S.; Consortium, Mint Evolutionary Genomics. | chemical diversification Polyploidy Phylogenomics ancient WGDs transcriptomics |
222 | Assessing Contemporary Evolution in Helianthus annuus using RNA-Seq Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Spear, Marissa M.; Etterson, Julie; Gross, Briana. | RNA-Seq Evolution Resurrection Helianthus |
649 | Assessing genome assembly quality using the LTR Assembly Index (LAI) Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Ou, Shujun; Chen, Jinfeng; Jiang, Ning. | genome assembly continunity LTR retrotransposon LTR Assembly Index |
385 | Caught in action: Fine-scale plastome evolution in the parasitic plants of Cuscuta sect. Ceratophorae (Convolvulaceae) Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Banerjee, Arjan; Stefanovic, Sasa. | Parasitic plant Cuscuta Convolvulaceae plastome Plastid Heterotrophy |
884 | Characterizing persistent bacterial co-habitants and their genetic contribution to an araphid pennate diatom Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Parks, Matthew; Wickett, Norman; Alverson, Andrew. | Diatoms phycosphere bacteria horizontal gene transfer |
688 | Comparative genomics of a species radiation: sequencing the apple tribe Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | DaCosta, Jeffrey; Yant, Levi; Potter, Daniel; Mathews, Sarah. | Maleae Rosaceae Comparative Genomics whole genome duplication |
531 | Comparative Transcriptomics and Genomic Patterns of Discordance in Capsiceae Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Spalink, Daniel; Stoffel, Kevin; Genevieve, Walden; Amanda, Hulse-Kemp; Theresa, Hill; Allen, Van Deynze; Bohs, Lynn Allison. | Capsiceae genealogical discordance pungency positive selection |
571 | Comparative transcriptomics and Selection of Differentially Expressed Genes in Drought-Shocked Mentzelia (Loasaceae) Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Wiggins, Raegan; Devitt, Jessica; Schenk, John. | Differential Expression Analysis drought Adaptive response Mentzelia Natural Selection Transcriptome evolution Expression variance and evolution model Xerophytes Loasaceae |
70 | Detecting Differential Gene Expression Linked to Foraging Behavior in Cuscuta harperi Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Webster, Rebecca. | Next generation sequencing Illumina Dodder Cuscuta Holoparasite VOC Recognition Foraging Behavior |
378 | Differential drought response and transcriptome size plasticity between aiploid and autotetraploid Tolmiea Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Visger, Clayton; Soltis, Pamela S.; Soltis, Douglas. | Polyploidy transcriptomics autopolyploidy Tolmiea |
431 | Differential gene expression linked to a reversion from dioecy to gynodioecy in Carica papaya Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Chae, Taylor; Harkess, Alex; Moore, Rich. | Quantitative Genetics Evolution Differential Expression Analysis |
803 | Canceled Elucidating Floral Nectary Development in Cleomaceae Using Histology and Transcriptomics Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Carey, Shane; Hall, Jocelyn. | Cleomaceae transcriptomics histology Nectary |
107 | Evolutionary Conservation of PBS1 Homologs in Family Poaceae Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Andersen, Ethan; Ali, Shaukat; Byamukama, Emmanuel; Yen, Yang; Neupane, Surendra; Nepal, Madhav. | Disease Resistance Plant Immunity Grasses Decoy Evolutionary Conservation |
494 | Exploring genetic mechanisms of polyploidy-induced salinity tolerance in Arabidopsis thaliana Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Kenny, Cecile; Doyle, Jeff; Coate, Jeremy. | Polyploidy salt stress RNA-Seq |
686 | Exploring serpentine tolerance in Caulanthus amplexicaulis through the integration of multiple genomic datasets Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Garza, Elyssa; Hawkins, Angela; Pepper, Alan. | genome Brassicaceae Serpentine Caulanthus Adaptation |
899 | From deep phylogeny to species complexes: The evolution of genomic repetitive elements in ferns Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Grusz, Amanda; Fehrenbach, Patrick; Sigel, Erin. | apomixis Hybridization Polyploidy transposable elements |
600 | Gene co-expression network connectivity is an important determinant of selective constraint during flower diversification in the magic flowers (Achimenes) Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Roberts, Wade; Roalson, Eric. | Achimenes co-expression network flower diversification Gesneriaceae pollination syndrome selective constraint transcriptomics |
407 | Gene Expression Plasticity and the Persistence of Plant Species across Environmental Variation Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Marx, Hannah; Maitner, Brian; Wisely, Eldridge; Jorgensen, Stacy; Dlugosch, Katrina; Barker, Michael. | Differential Expression Analysis Harvard Forest Plasticity NEON RNAseq |
614 | Gene Family Expansion in the Sonoran Desert Clade of Asclepias Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Boutte, Julien; Fishbein, Mark; Coriton, Olivier; Rousseau-Gueutin, Mathieu; Straub, Shannon. | gene duplication FISH Copy Number Estimation |
752 | Genes, Genomes, and Gamma Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Chanderbali, Andre; Berger, Brent; Albert, Victor; Howarth, Dianella; Soltis, Douglas; Soltis, Pamela S.. | gamma Pentapetalae Buxales Trochodendrales paleohexaploidy eudicots |
106 | Genome-wide Identification of Disease Resistance Genes in Sunflower (Helianthus annuus L.) Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Neupane, Surendra; Nepal, Madhav. | NBS-genes Sunflower TNLs CNLs RNLs Phylogeny of R-genes |
105 | Genome-wide Identification of Mitogen Activated Protein Kinase (MAP Kinase) Cascade Genes in Sunflower Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Schweitzer, Sarah; Neupane, Surendra; Andersen, Ethan; Zhou, Ruanbao; Fenell, Anne; Nepal, Madhav. | MAP Kinase Gene Family Abiotic Stress Signal Transduction Pathway MAPK MAPKK MAPKKK Zik Raf MEKK
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114 | Genome-wide identification of resistant genes in domesticated and wild rice varieties (Oryza spp; Poaceae) Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Allasi Canales , Nataly Olivia. | NBS-LRR Oryza positive selection R gene phylogeny |
142 | Identifying Gene Candidates of the Shikonin Biosynthesis Pathway in the Chinese Medicinal Plant Lithospermum erythrorhizon Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Auber, Robert; Crook, Joseph; Widhalm, Joshua; Wisecaver, Jennifer. | Specialized Metabolite De novo Transcriptome Differential Expression Analysis |
112 | Identifying sequence heteroplasmy across entire organellar genomes of Daucus carota using whole genome sequence data Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Ramsey, Adam; Phan, Vinthuy; Pham, Diem-Trang; Melton, Caroline; Daigle, Bernie; Mandel, Jennifer. | carrot mitochondria chloroplast SNP bioinformatic pipeline NGS |
801 | Incorporating a fern genome into land plant evolutionary genomics Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Marchant, Daniel Blaine; Sessa, Emily; Wolf, Paul; Soltis, Pamela S.; Soltis, Douglas. | ferns Polyploidy genome evolution transposable elements transcriptomics |
943 | Intragenomic variation of ribosomal genes and evidence of concerted evolution in the opportunistic pathogen Candida Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Buchheim, Mark; Alanagreh, Lo'ai. | Candida Chlamydomonas Haematococcus concerted evolution parasexuality intragenomic variation ITS2 |
652 | LTR_retriever: a highly accurate and sensitive program for identification of LTR retrotransposons Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Ou, Shujun; Jiang, Ning. | LTR retrotransposon LTR_retriever transposable element genome annotation Evolution |
598 | Machine learning approaches for the inference of WGDs from gene age distributions Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Trostle, Alex; Goyal, Anshu; Galuska, Sally; Reardon, Chris; Tiley, George; Ellis, Jake; Li, Zheng; Sutherland, Brittany; Barker, Michael. | Polyploidy Genomics Machine Learning WGD paleopolyploidy gene duplication |
282 | Methylation repatterning in the endosperm and embryo of interploid Mimulus hybrids Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Lawrence , Amelia H; Kinser, Taliesin; Puzey, Joshua. | Methylation Endosperm Hybridization Polyploid Interploid Mimulus |
792 | Canceled Plastome Evolution in Apocynaceae Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Straub, Shannon; Boutte, Julien; Walter, Lauren; Lunderman, Elizabeth; Bailey, Donovan; Livshultz, Tatyana; Simoes, André; Fishbein, Mark. | Apocynaceae plastome intracellular gene transfer pseudogene |
342 | Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflict induced by hybridization Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Pires, Joseph Chris; Emery, Marianne; Willis, Madeline; Hao, Yue; Barry, Kerrie; Schmutz, Jeremy; Lyons, Eric; Edger, Patrick; Conant, Gavin. | Genomics Polyploidy Phylogenomics Hybridization evolutionary genomics |
210 | Quantifying transcriptome size variation and dosage responses immediately following ploidy change in Arabidopsis thaliana Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Song, Michael; Potter, Barney; Doyle, Jeff; Coate, Jeremy. | Polyploidy dosage transcriptomes whole genome duplication Evolution |
769 | Testing a "two gene" model for sex chromosome evolution in asparagus Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Harkess, Alex; Leebens-Mack, Jim; Meyers, Blake; Huang, Kun; Batish, Mona. | Sex chromosomes dioecy |
657 | The genomic composition and domestication of Asian rice revealed by 3,400 rice genomes Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Ou, Shujun; Jiang, Ning. | Oryza domestication Rice selective sweep population structure |
941 | The interplay of alternative splicing and gene duplication in Oryza Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Catlin, Nathan; Wing, Rod A.; Soltis, Douglas; Soltis, Pamela S.; Barbazuk, W. Brad. | Alternative splicing gene duplication Oryza transcriptomics |
604 | Transcription Factor Family Evolution in Fully Mycoheterotrophic Orchids Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Sinn, Brandon; Ranjbaran, Ali; Barrett, Craig. | Orchid fungi transcriptomics transcription factors gene family evolution |
954 | Transcriptomics, phylogeny, and biochemistry elucidate evolution of chemical diversity and complexity in Lamiaceae Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Buell, C. Robin; Crisovan, Emily; Dudareva, Natalia; Garcia, Nicolas; Godden, Grant; Henry, Laura; Kamileen, Mohamed O.; Kates, Heather; Kilgore, Matthew B.; Lichman, Benjamin R.; Mavrodiev, Evgeny; Newton, Linsey; Rodriguez-Lopez, Carlos; O'Connor, Sarah E.; Soltis, Douglas; Soltis, Pamela S.; Vaillancourt, Brieanne; Wiegert-Rininger, Krystle; Zhao, Dongyan. | Lamiaceae transcriptomes Genomics Specialized metabolism monoterpenes sesquiterpenes iridoids phylogeny Biochemistry |
942 | Transposon diversity and abundance variation as a consequence of climatic variables in Andropogoneae (Poaceae) Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | McKain, Michael; Pienaar, Jason; Zudock, Kristina; AuBuchon, Taylor; Saeidi, Saman; Pasquet, Remy; Layton, Daniel; Welker, Cassiano; Art-han, Watchara; Traiperm, Paweena; McAllister, Chrissy; Kellogg, Elizabeth. | Andropogoneae Poaceae genome evolution transposable elements bioclim |
908 | Variation in evolutionary rates across genomes in orchids Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Valencia, Janice ; Neubig, Kurt; Whitten, William. | |
87 | Variation in photosynthetic function and gene expression in parasitic dodder Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Schneider, Adam; Besik, Ariana; Ensminger, Ingo; Stefanovic, Sasa. | Cuscuta photosynthesis pulse amplutide modified (PAM) fluorimetry transcriptomics |